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eRAM

encyclopedia of Rare Disease Annotation for Precision Medicine



   gapo syndrome
  

Disease ID 816
Disease gapo syndrome
Definition
A multiple congenital anomalies syndrome. Approximately 38 patients have been reported in literature since the first description in 1947. Patients have a short stature and a typical facies. Scalp hair may be primarily present but disappears after the first months of life leading to complete or partial alopecia. Eyebrows and/or eyelashes are sparse. Primary and permanent teeth are formed but fail to erupt. Ocular manifestations may include progressive optic atrophy, glaucoma and strabismus. Otorhinolaryngologic features include choanal atresia and deafness. Patients have a mild intellectual deficit. Some patients have also been reported with umbilical hernia, hyperextensible joints, osseous anomalies and cutaneous manifestations. Homozygous nonsense or splicing mutations in the ANTXR1 gene, encoding anthrax toxin receptor 1 cause GAPO Syndrome.
Synonym
gapo (growth retardation, alopecia, pseudoanodontia, optic atrophy) syndrome
gapo - growth retardation, alopecia, pseudoanodontia, optic atrophy
growth retardation, alopecia, pseudoanodontia and optic atrophy
growth retardation, alopecia, pseudoanodontia, and optic atrophy
growth retardation, alopecia, pseudoanodontia, optic atrophy
growth retardation, alopecia, pseudoanodontia, optic atrophy syndrome
growth retardation, alopecia, pseudoanodontia, optic atrophy syndrome (disorder)
odontotrichomelic syndrome
odontotrichomelic syndrome (disorder)
tetramelic deficiencies, ectodermal dysplasia, deformed ears, and other abnormalities
Orphanet
OMIM
UMLS
C0406723
SNOMED-CT
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:4)
C0034212  |  pyoderma  |  1
C0155088  |  interstitial keratitis  |  1
C0022568  |  keratitis  |  1
C0010278  |  craniosynostosis  |  1
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:1)
84168  |  ANTXR1  |  CLINVAR;ORPHANET
Inferring Gene(Waiting for update.)
Text Mined Gene(Waiting for update.)
Locus
Symbol | Locus(Total Locus:1)
ANTXR1  |  2p13.3
Disease ID 816
Disease gapo syndrome
Integrated Phenotype
HPO | Name(Total Integrated Phenotypes:74)
HP:0000639  |  Nystagmus
HP:0011800  |  Midface retrusion
HP:0000787  |  Nephrolithiasis
HP:0000535  |  Sparse eyebrow
HP:0004322  |  Short stature
HP:0000347  |  Hypoplasia of mandible
HP:0000545  |  Myopia
HP:0000798  |  Oligospermia
HP:0000365  |  Hearing impairment
HP:0000453  |  Choanal atresia
HP:0001006  |  Marked hypotrichosis
HP:0007495  |  Prematurely aged appearance
HP:0005280  |  Depressed nasal bridge
HP:0000232  |  Everted lower lip vermilion
HP:0000974  |  Hyperextensible skin
HP:0100659  |  Abnormality of the cerebral vasculature
HP:0000337  |  Broad forehead
HP:0002644  |  Abnormality of pelvic girdle bone morphology
HP:0002557  |  Hypoplastic nipples
HP:0000648  |  Optic-nerve degeneration
HP:0000563  |  Keratoconus
HP:0000135  |  Hypogonadism
HP:0000347  |  Micrognathia
HP:0001939  |  Laboratory abnormality
HP:0002007  |  Frontal bossing
HP:0000303  |  Mandibular prognathia
HP:0000369  |  Low-set ears
HP:0001537  |  Umbilical hernia
HP:0001053  |  Hypopigmented skin patches
HP:0005692  |  Joint hyperflexibility
HP:0000316  |  Hypertelorism
HP:0000343  |  Long philtrum
HP:0001555  |  Asymmetry of the thorax
HP:0000164  |  Abnormality of the teeth
HP:0000563  |  Conical cornea
HP:0000684  |  Delayed eruption of teeth
HP:0002007  |  Frontal protruberance
HP:0002516  |  Increased intracranial pressure
HP:0000179  |  Plump lower lip
HP:0002234  |  Early balding
HP:0004331  |  Decreased skull ossification
HP:0001028  |  Hemangioma
HP:0001510  |  Growth delay
HP:0100607  |  Dysmenorrhea
HP:0000889  |  Abnormality of the clavicle
HP:0003312  |  Abnormal form of the vertebral bodies
HP:0000411  |  Prominent ears
HP:0005280  |  Flat, nasal bridge
HP:0000260  |  Wide anterior fontanel
HP:0002750  |  Delayed bone maturation
HP:0001043  |  Prominent scalp veins
HP:0001537  |  Umbilical hernias
HP:0000648  |  Optic atrophy
HP:0009928  |  Thick nasal alae
HP:0000653  |  Sparse eyelashes
HP:0010609  |  Skin tags
HP:0001596  |  Hair loss
HP:0003187  |  Underdeveloped breasts
HP:0000141  |  Amenorrhea
HP:0001596  |  Alopecia
HP:0000505  |  Visual impairment
HP:0000348  |  High forehead
HP:0002750  |  Delayed skeletal maturation
HP:0000463  |  Anteverted nares
HP:0005576  |  Renal interstitial fibrosis
HP:0001510  |  Growth deficiency
HP:0000765  |  Abnormality of the thorax
HP:0009891  |  Underdeveloped supraorbital ridges
HP:0000270  |  Late closing fontanelles
HP:0000174  |  Abnormality of the palate
HP:0000501  |  Glaucoma
HP:0000944  |  Abnormality of the metaphyses
HP:0100540  |  Palpebral edema
HP:0002621  |  Atherosclerosis
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:4)
Disease ID 816
Disease gapo syndrome
Manually Symptom(Waiting for update.)
Text Mined Symptom(Waiting for update.)
Manually Genotype(Total Text Mining Genotypes:0)
(Waiting for update.)
Text Mining Genotype(Total Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:2)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs397514700NA84168ANTXR1umls:C0406723CLINVARNA0.240814326NAANTXR1269075602CT
rs397514701NA84168ANTXR1umls:C0406723CLINVARNA0.240814326NAANTXR1269044779CT
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:28)
HP ID HP Name MP ID MP Name Annotation
HP:0000179Thick lower lip vermilionMP:0005170cleft upper lipdefect in the upper lip where the maxillary prominence fails to merge with the merged medial nasal prominences
HP:0000648Optic atrophyMP:0012506brain atrophyacquired diminution of the size of the brain associated with wasting as from death and reabsorbtion of cells, diminished cellular proliferation, decreased cellular volume, pressure, ischemia, malnutrition, reduced function or malfunction, or hormonal chan
HP:0005280Depressed nasal bridgeMP:0013582abnormal lateral nasal gland morphologyany structural anomaly of the lateral nasal glands (the largest nasal secretory glands in rodents) which surround the maxillary sinus located in the lateral wall adjacent to each nasal passage and are characterized by cytologic features similar to those d
HP:0003187Breast hypoplasiaMP:0009101clitoris hypoplasiaunderdevelopment or reduced size of the clitoris, usually due to a reduced number of cells
HP:0000453Choanal atresiaMP:0009510cecal atresiacongenital blockage or absence of the lumen of the cecum
HP:0000974Hyperextensible skinMP:0010678abnormal skin adnexa morphologyany structural anomaly of the tissue or structures associated with or embedded in the skin such as hair and hair follicles, sweat glands, sebaceous glands and claws or nails
HP:0005576Tubulointerstitial fibrosisMP:0011377renal glomerulus fibrosisformation of fibrous tissue in the renal glomerulus as a result of repair or a reactive process
HP:0000174Abnormality of the palateMP:0010701fusion of atlas and odontoid processthe large protuberance that projects upward from the cervical axis (C2), around which the cervical atlas normally rotates, is instead fused to elements of the atlas; the odontoid process may or may not remain attached to the axis
HP:0002644Abnormality of pelvic girdle bone morphologyMP:0013620increased internal diameter of femurincreased cross-sectional distance that extends from one lateral edge of the femur long bone marrow cavity, through its center and to the opposite lateral edge of the bone marrow cavity through the mid point of the femur
HP:0003312Abnormal form of the vertebral bodiesMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0000260Wide anterior fontanelMP:0012159absent anterior visceral endodermabsence of the extraembryonic tissue that is responsible for the proper orientation of the anterior-posterior axis of the embryo and for appropriate patterning of adjacent embryonic tissue
HP:0001537Umbilical herniaMP:0010146umbilical herniaan outward bulging (protrusion) of the abdominal lining or part of the abdominal organ(s) through the area around the umbilicus; occurs when the muscle through which blood vessels pass to feed the developing fetus fails to completely close
HP:0100659Abnormality of the cerebral vasculatureMP:0004499increased incidence of tumors by chemical inductionhigher than normal frequency of tumor incidence induced by one or more chemical carcinogens or mutagens
HP:0011800Hypoplasia of midfaceMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0004331Decreased skull ossificationMP:0020040decreased bone ossificationdecrease in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance
HP:0100540Palpebral edemaMP:0001786skin edemaaccumulation of an excessive amount of fluid in the skin layers or just underneath the skin
HP:0001053Hypopigmented skin patchesMP:0004947skin inflammationlocal accumulation of fluid, plasma proteins, and leukocytes in the skin
HP:0000765Abnormality of the thoraxMP:0013620increased internal diameter of femurincreased cross-sectional distance that extends from one lateral edge of the femur long bone marrow cavity, through its center and to the opposite lateral edge of the bone marrow cavity through the mid point of the femur
HP:0000411Protruding earMP:0005105abnormal middle ear ossicle morphologyany structural anomaly of the three small bones of the middle ear
HP:0000684Delayed eruption of teethMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0002750Delayed skeletal maturationMP:0003379absent sexual maturationfailure to initiate pubertal changes that result in achievement of full sexual capacity
HP:0000270Delayed cranial suture closureMP:0010743delayed suture closurelate onset of the fusion of the bones of the skull
HP:0000232Everted lower lip vermilionMP:0005170cleft upper lipdefect in the upper lip where the maxillary prominence fails to merge with the merged medial nasal prominences
HP:0000944Abnormality of the metaphysesMP:0013621decreased internal diameter of femurreduced cross-sectional distance that extends from one lateral edge of the femur long bone marrow cavity, through its center and to the opposite lateral edge of the bone marrow cavity through the mid point of the femur
HP:0001555Asymmetry of the thoraxMP:0009657failure of chorioallantoic fusionfailure to initiate and/or complete the formation of a highly vascularized extra-embryonic fetal membrane by fusion of the chorion and allantois
HP:0000164Abnormality of the teethMP:0010382abnormal dosage compensation, by inactivation of X chromosomeanomaly in the process of compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex
HP:0000889Abnormality of the clavicleMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0001939Abnormality of metabolism/homeostasisMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
Mapped by homologous gene(Total Items:63)
HP ID HP Name MP ID MP Name Annotation
HP:0000411Protruding earMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0001028HemangiomaMP:0014171increased fatty acid oxidationincreased rate or incidence of the process of removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydr
HP:0000653Sparse eyelashesMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000270Delayed cranial suture closureMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000164Abnormality of the teethMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0002516Increased intracranial pressureMP:0020215impaired blood coagulationimpaired ability of the blood to clot
HP:0001006HypotrichosisMP:0014082decreased small intestinal villus heightdecreased height of the tiny hair-like projections which protrude from the inside of the small intestine and contain blood vessels that capture digested nutrients that are absorbed through the intestinal wall; usually accompanied by crypt elongation or hy
HP:0000303Mandibular prognathiaMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0000453Choanal atresiaMP:0020234decreased basal metabolismdecrease in heat production of an organism at the lowest level of cell chemistry in an inactive, awake, and fasting state
HP:0000463Anteverted naresMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0002557Hypoplastic nipplesMP:0013785abnormal mammary gland bud morphologyany structural anomaly of the morphologically distinct bulb of epithelial cells formed once each mammary placode expands and invaginates into the underlying mesenchyme; in mouse embryos at E12.5, each epithelial bud with its contiguous mesenchyme is eleva
HP:0000174Abnormality of the palateMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0004322Short statureMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000535Sparse eyebrowMP:0014185cerebellum atrophyacquired diminution of the size of the cerebellum associated with wasting as from death and reabsorption of cells, diminished cellular proliferation, decreased cellular volume, pressure, ischemia, malnutrition, reduced function or malfunction, or hormonal
HP:0000347MicrognathiaMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000501GlaucomaMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000135HypogonadismMP:0014198absent pituitary infundibular stalkabsence of the apical portion of the tubular structure extending from the hypothalamus to the posterior lobe of the pituitary gland
HP:0000316HypertelorismMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000889Abnormality of the clavicleMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0010609Skin tagsMP:0014171increased fatty acid oxidationincreased rate or incidence of the process of removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydr
HP:0001510Growth delayMP:0020169increased thyroid gland weighthigher than average weight of the thyroid gland
HP:0001555Asymmetry of the thoraxMP:0014171increased fatty acid oxidationincreased rate or incidence of the process of removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydr
HP:0000337Broad foreheadMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0005280Depressed nasal bridgeMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0100659Abnormality of the cerebral vasculatureMP:0020220decreased tear productiondecreased production of the amount of fluid produced in the eye
HP:0000765Abnormality of the thoraxMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0001053Hypopigmented skin patchesMP:0014164abnormal ciliary process morphology any structural anomaly of any of the pigmented processes that radiate from the ciliary muscle and give attachments to ligaments supporting the lens of the eye; these processes increase in thickness as they advance from the orbiculus ciliaris to the exter
HP:0000348High foreheadMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0002621AtherosclerosisMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000787NephrolithiasisMP:0020316decreased vascular endothelial cell proliferationdecrease in the expansion rate of any vascular endothelial cell population by cell division
HP:0000563KeratoconusMP:0013743ciliary body hypoplasiaunderdevelopment or reduced size, usually due to a reduced number of cells, of the thickened portion of the vascular tunic which lies between the choroid and the iris
HP:0000365Hearing impairmentMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000232Everted lower lip vermilionMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0001939Abnormality of metabolism/homeostasisMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0100540Palpebral edemaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0003187Breast hypoplasiaMP:0013886increased CD4-negative, CD25-positive NK T cell numberincrease in the number of CD4-negative NK T cells expressing the activation marker CD25
HP:0000639NystagmusMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000684Delayed eruption of teethMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0003312Abnormal form of the vertebral bodiesMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001043Prominent scalp veinsMP:0013258abnormal extracellular matrix morphologyany structural anomaly of the structure lying external to one or more cells, which provides structural support for cells or tissues; in mammals, the extracellular matrix is completely external to the cell
HP:0009928Thick nasal alaeMP:0004924abnormal behaviorany anomaly in the actions, reactions, or performance of an organism in response to external or internal stimuli compared to controls
HP:0000260Wide anterior fontanelMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000179Thick lower lip vermilionMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0000343Long philtrumMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0001537Umbilical herniaMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000545MyopiaMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0007495Prematurely aged appearanceMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0002750Delayed skeletal maturationMP:0020169increased thyroid gland weighthigher than average weight of the thyroid gland
HP:0000369Low-set earsMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0011800Hypoplasia of midfaceMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0005692Joint hyperflexibilityMP:0012125decreased bronchoconstrictive responsereduction in the expected bronchoconstrictive response to provocation challenge with lipopolysaccharide, bradykinin, histamine or other antigen/allergen or agent, often measured by plethysmography
HP:0002644Abnormality of pelvic girdle bone morphologyMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0004331Decreased skull ossificationMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000505Visual impairmentMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000974Hyperextensible skinMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0002007Frontal bossingMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0005576Tubulointerstitial fibrosisMP:0014074increased brain glycogen levelgreater than the normal concentration of a readily converted carbohydrate reserve in brain
HP:0009891Underdeveloped supraorbital ridgesMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000141AmenorrheaMP:0013395eyelid hypoplasiaunderdevelopment or reduced size of the skin folds covering the front of the eyeball, usually due to a decreased cell number
HP:0000648Optic atrophyMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000944Abnormality of the metaphysesMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000798OligospermiaMP:0013505decreased embryonic tissue cell apoptosisdecrease in the timing or the number of cells in embryonic tissue undergoing programmed cell death
HP:0001596AlopeciaMP:0020220decreased tear productiondecreased production of the amount of fluid produced in the eye
Disease ID 816
Disease gapo syndrome
Case(Waiting for update.)